thyroid nodule
A Deep Learning Framework for Thyroid Nodule Segmentation and Malignancy Classification from Ultrasound Images
Abdelrazik, Omar, Elsayed, Mohamed, Wahab, Noorul, Rajpoot, Nasir, Shephard, Adam
Ultrasound-based risk stratification of thyroid nodules is a critical clinical task, but it suffers from high inter-observer variability. While many deep learning (DL) models function as "black boxes," we propose a fully automated, two-stage framework for interpretable malignancy prediction. Our method achieves interpretability by forcing the model to focus only on clinically relevant regions. First, a TransUNet model automatically segments the thyroid nodule. The resulting mask is then used to create a region of interest around the nodule, and this localised image is fed directly into a ResNet-18 classifier. We evaluated our framework using 5-fold cross-validation on a clinical dataset of 349 images, where it achieved a high F1-score of 0.852 for predicting malignancy. To validate its performance, we compared it against a strong baseline using a Random Forest classifier with hand-crafted morphological features, which achieved an F1-score of 0.829. The superior performance of our DL framework suggests that the implicit visual features learned from the localised nodule are more predictive than explicit shape features alone. This is the first fully automated end-to-end pipeline for both detecting thyroid nodules on ultrasound images and predicting their malignancy.
Accurate Thyroid Cancer Classification using a Novel Binary Pattern Driven Local Discrete Cosine Transform Descriptor
Saini, Saurabh, Ahuja, Kapil, Steinbach, Marc C., Wick, Thomas
In this study, we develop a new CAD system for accurate thyroid cancer classification with emphasis on feature extraction. Prior studies have shown that thyroid texture is important for segregating the thyroid ultrasound images into different classes. Based upon our experience with breast cancer classification, we first conjuncture that the Discrete Cosine Transform (DCT) is the best descriptor for capturing textural features. Thyroid ultrasound images are particularly challenging as the gland is surrounded by multiple complex anatomical structures leading to variations in tissue density. Hence, we second conjuncture the importance of localization and propose that the Local DCT (LDCT) descriptor captures the textural features best in this context. Another disadvantage of complex anatomy around the thyroid gland is scattering of ultrasound waves resulting in noisy and unclear textures. Hence, we third conjuncture that one image descriptor is not enough to fully capture the textural features and propose the integration of another popular texture capturing descriptor (Improved Local Binary Pattern, ILBP) with LDCT. ILBP is known to be noise resilient as well. We term our novel descriptor as Binary Pattern Driven Local Discrete Cosine Transform (BPD-LDCT). Final classification is carried out using a non-linear SVM. The proposed CAD system is evaluated on the only two publicly available thyroid cancer datasets, namely TDID and AUITD. The evaluation is conducted in two stages. In Stage I, thyroid nodules are categorized as benign or malignant. In Stage II, the malignant cases are further sub-classified into TI-RADS (4) and TI-RADS (5). For Stage I classification, our proposed model demonstrates exceptional performance of nearly 100% on TDID and 97% on AUITD. In Stage II classification, the proposed model again attains excellent classification of close to 100% on TDID and 99% on AUITD.
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Leveraging Generative AI to Enhance Synthea Module Development
Kramer, Mark A., Mathur, Aanchal, Adams, Caroline E., Walonoski, Jason A.
This paper explores the use of large language models (LLMs) to assist in the development of new disease modules for Synthea, an open-source synthetic health data generator. Incorporating LLMs into the module development process has the potential to reduce development time, reduce required expertise, expand model diversity, and improve the overall quality of synthetic patient data. We demonstrate four ways that LLMs can support Synthea module creation: generating a disease profile, generating a disease module from a disease profile, evaluating an existing Synthea module, and refining an existing module. We introduce the concept of progressive refinement, which involves iteratively evaluating the LLM-generated module by checking its syntactic correctness and clinical accuracy, and then using that information to modify the module. While the use of LLMs in this context shows promise, we also acknowledge the challenges and limitations, such as the need for human oversight, the importance of rigorous testing and validation, and the potential for inaccuracies in LLM-generated content. The paper concludes with recommendations for future research and development to fully realize the potential of LLM-aided synthetic data creation.
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STACT-Time: Spatio-Temporal Cross Attention for Cine Thyroid Ultrasound Time Series Classification
Adam, Irsyad, Zhang, Tengyue, Raman, Shrayes, Qiu, Zhuyu, Taraku, Brandon, Feng, Hexiang, Wang, Sile, Radhachandran, Ashwath, Athreya, Shreeram, Ivezic, Vedrana, Ping, Peipei, Arnold, Corey, Speier, William
Thyroid cancer is among the most common cancers in the United States. Thyroid nodules are frequently detected through ultrasound (US) imaging, and some require further evaluation via fine-needle aspiration (FNA) biopsy. Despite its effectiveness, FNA often leads to unnecessary biopsies of benign nodules, causing patient discomfort and anxiety. To address this, the American College of Radiology Thyroid Imaging Reporting and Data System (TI-RADS) has been developed to reduce benign biopsies. However, such systems are limited by interobserver variability. Recent deep learning approaches have sought to improve risk stratification, but they often fail to utilize the rich temporal and spatial context provided by US cine clips, which contain dynamic global information and surrounding structural changes across various views. In this work, we propose the Spatio-Temporal Cross Attention for Cine Thyroid Ultrasound Time Series Classification (STACT-Time) model, a novel representation learning framework that integrates imaging features from US cine clips with features from segmentation masks automatically generated by a pretrained model. By leveraging self-attention and cross-attention mechanisms, our model captures the rich temporal and spatial context of US cine clips while enhancing feature representation through segmentation-guided learning. Our model improves malignancy prediction compared to state-of-the-art models, achieving a cross-validation precision of 0.91 (plus or minus 0.02) and an F1 score of 0.89 (plus or minus 0.02). By reducing unnecessary biopsies of benign nodules while maintaining high sensitivity for malignancy detection, our model has the potential to enhance clinical decision-making and improve patient outcomes.
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Reducing Overtreatment of Indeterminate Thyroid Nodules Using a Multimodal Deep Learning Model
Athreya, Shreeram, Melehy, Andrew, Suthahar, Sujit Silas Armstrong, Ivezić, Vedrana, Radhachandran, Ashwath, Sant, Vivek, Moleta, Chace, Zheng, Henry, Patel, Maitraya, Masamed, Rinat, Arnold, Corey W., Speier, William
Objective: Molecular testing (MT) classifies cytologically indeterminate thyroid nodules as benign or malignant with high sensitivity but low positive predictive value (PPV), only using molecular profiles, ignoring ultrasound (US) imaging and biopsy. We address this limitation by applying attention multiple instance learning (AMIL) to US images. Methods: We retrospectively reviewed 333 patients with indeterminate thyroid nodules at UCLA medical center (259 benign, 74 malignant). A multi-modal deep learning AMIL model was developed, combining US images and MT to classify the nodules as benign or malignant and enhance the malignancy risk stratification of MT. Results: The final AMIL model matched MT sensitivity (0.946) while significantly improving PPV (0.477 vs 0.448 for MT alone), indicating fewer false positives while maintaining high sensitivity. Conclusion: Our approach reduces false positives compared to MT while maintaining the same ability to identify positive cases, potentially reducing unnecessary benign thyroid resections in patients with indeterminate nodules.
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Advancements in Radiomics and Artificial Intelligence for Thyroid Cancer Diagnosis
Yousefi, Milad, Maleki, Shadi Farabi, Jafarizadeh, Ali, Youshanlui, Mahya Ahmadpour, Jafari, Aida, Pedrammehr, Siamak, Alizadehsani, Roohallah, Tadeusiewicz, Ryszard, Plawiak, Pawel
Thyroid cancer is an increasing global health concern that requires advanced diagnostic methods. The application of AI and radiomics to thyroid cancer diagnosis is examined in this review. A review of multiple databases was conducted in compliance with PRISMA guidelines until October 2023. A combination of keywords led to the discovery of an English academic publication on thyroid cancer and related subjects. 267 papers were returned from the original search after 109 duplicates were removed. Relevant studies were selected according to predetermined criteria after 124 articles were eliminated based on an examination of their abstract and title. After the comprehensive analysis, an additional six studies were excluded. Among the 28 included studies, radiomics analysis, which incorporates ultrasound (US) images, demonstrated its effectiveness in diagnosing thyroid cancer. Various results were noted, some of the studies presenting new strategies that outperformed the status quo. The literature has emphasized various challenges faced by AI models, including interpretability issues, dataset constraints, and operator dependence. The synthesized findings of the 28 included studies mentioned the need for standardization efforts and prospective multicenter studies to address these concerns. Furthermore, approaches to overcome these obstacles were identified, such as advances in explainable AI technology and personalized medicine techniques. The review focuses on how AI and radiomics could transform the diagnosis and treatment of thyroid cancer. Despite challenges, future research on multidisciplinary cooperation, clinical applicability validation, and algorithm improvement holds the potential to improve patient outcomes and diagnostic precision in the treatment of thyroid cancer.
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Machine Learning and Vision Transformers for Thyroid Carcinoma Diagnosis: A review
Habchi, Yassine, Kheddar, Hamza, Himeur, Yassine, Boukabou, Abdelkrim, Chouchane, Ammar, Ouamane, Abdelmalik, Atalla, Shadi, Mansoor, Wathiq
The growing interest in developing smart diagnostic systems to help medical experts process extensive data for treating incurable diseases has been notable. In particular, the challenge of identifying thyroid cancer (TC) has seen progress with the use of machine learning (ML) and big data analysis, incorporating transformers to evaluate TC prognosis and determine the risk of malignancy in individuals. This review article presents a summary of various studies on AIbased approaches, especially those employing transformers, for diagnosing TC. It introduces a new categorization system for these methods based on artifcial intelligence (AI) algorithms, the goals of the framework, and the computing environments used. Additionally, it scrutinizes and contrasts the available TC datasets by their features. The paper highlights the importance of AI instruments in aiding the diagnosis and treatment of TC through supervised, unsupervised, or mixed approaches, with a special focus on the ongoing importance of transformers in medical diagnostics and disease management. It further discusses the progress made and the continuing obstacles in this area. Lastly, it explores future directions and focuses within this research feld.
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AI-Generated Content Enhanced Computer-Aided Diagnosis Model for Thyroid Nodules: A ChatGPT-Style Assistant
Yao, Jincao, Wang, Yunpeng, Lei, Zhikai, Wang, Kai, Li, Xiaoxian, Zhou, Jianhua, Hao, Xiang, Shen, Jiafei, Wang, Zhenping, Ru, Rongrong, Chen, Yaqing, Zhou, Yahan, Chen, Chen, Zhang, Yanming, Liang, Ping, Xu, Dong
An artificial intelligence-generated content-enhanced computer-aided diagnosis (AIGC-CAD) model, designated as ThyGPT, has been developed. This model, inspired by the architecture of ChatGPT, could assist radiologists in assessing the risk of thyroid nodules through semantic-level human-machine interaction. A dataset comprising 19,165 thyroid nodule ultrasound cases from Zhejiang Cancer Hospital was assembled to facilitate the training and validation of the model. After training, ThyGPT could automatically evaluate thyroid nodule and engage in effective communication with physicians through human-computer interaction. The performance of ThyGPT was rigorously quantified using established metrics such as the receiver operating characteristic (ROC) curve, area under the curve (AUC), sensitivity, and specificity. The empirical findings revealed that radiologists, when supplemented with ThyGPT, markedly surpassed the diagnostic acumen of their peers utilizing traditional methods as well as the performance of the model in isolation. These findings suggest that AIGC-CAD systems, exemplified by ThyGPT, hold the promise to fundamentally transform the diagnostic workflows of radiologists in forthcoming years.
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From Data to Insights: A Comprehensive Survey on Advanced Applications in Thyroid Cancer Research
Zhang, Xinyu, Lee, Vincent CS, Liu, Feng
Thyroid cancer, the most prevalent endocrine cancer, has gained significant global attention due to its impact on public health. Extensive research efforts have been dedicated to leveraging artificial intelligence (AI) methods for the early detection of this disease, aiming to reduce its morbidity rates. However, a comprehensive understanding of the structured organization of research applications in this particular field remains elusive. To address this knowledge gap, we conducted a systematic review and developed a comprehensive taxonomy of machine learning-based applications in thyroid cancer pathogenesis, diagnosis, and prognosis. Our primary objective was to facilitate the research community's ability to stay abreast of technological advancements and potentially lead the emerging trends in this field. This survey presents a coherent literature review framework for interpreting the advanced techniques used in thyroid cancer research. A total of 758 related studies were identified and scrutinized. To the best of our knowledge, this is the first review that provides an in-depth analysis of the various aspects of AI applications employed in the context of thyroid cancer. Furthermore, we highlight key challenges encountered in this domain and propose future research opportunities for those interested in studying the latest trends or exploring less-investigated aspects of thyroid cancer research. By presenting this comprehensive review and taxonomy, we contribute to the existing knowledge in the field, while providing valuable insights for researchers, clinicians, and stakeholders in advancing the understanding and management of this disease.
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AI in Thyroid Cancer Diagnosis: Techniques, Trends, and Future Directions
Habchi, Yassine, Himeur, Yassine, Kheddar, Hamza, Boukabou, Abdelkrim, Atalla, Shadi, Chouchane, Ammar, Ouamane, Abdelmalik, Mansoor, Wathiq
There has been a growing interest in creating intelligent diagnostic systems to assist medical professionals in analyzing and processing big data for the treatment of incurable diseases. One of the key challenges in this field is detecting thyroid cancer, where advancements have been made using machine learning (ML) and big data analytics to evaluate thyroid cancer prognosis and determine a patient's risk of malignancy. This review paper summarizes a large collection of articles related to artificial intelligence (AI)-based techniques used in the diagnosis of thyroid cancer. Accordingly, a new classification was introduced to classify these techniques based on the AI algorithms used, the purpose of the framework, and the computing platforms used. Additionally, this study compares existing thyroid cancer datasets based on their features. The focus of this study is on how AI-based tools can support the diagnosis and treatment of thyroid cancer, through supervised, unsupervised, or hybrid techniques. It also highlights the progress made and the unresolved challenges in this field. Finally, the future trends and areas of focus in this field are discussed.
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